Fasta Herder 2

MODE 1: CLUSTER

Paste sequences in FASTA format

or upload a file (2 Mb max)

to CLUSTER sequences.

Due to time constraints, in case you want to cluster sequences from a file with more than 2 Mb we provide the standalone version of FastaHerder2 mode 1. Use it wisely: FastaHerder2 standalone

| What's this?

MODE 4: SEARCH CLUSTERS

SEARCH CLUSTERS using a combination of selected annotations.

Cluster length subrange from to

Cluster number of proteins from to
.

Must the cluster have at least one sequence with...

...PDB annotation?

...PMID information?

...Pfam information?

...polyP regions?	...polyE regions?	...polyK regions?	...polyS regions?	...polyQ regions?
...polyH regions?	...polyD regions?	...polyR regions?	...polyG regions?	...polyA regions?
...polyC regions?	...polyF regions?	...polyI regions?	...polyL regions?	...polyM regions?
...polyN regions?	...polyT regions?	...polyV regions?	...polyW regions?	...polyY regions?

In the cluster, the following Pfam domain/s...

MUST be present in at least one protein: (Pfam domain names separated by "+")

MUST NOT be present in any protein: (Pfam domain names separated by "+")

.

In the cluster, ...

there MUST be at least one sequence from the following organism/s: (taxonomic id from an organism, e.g. 9606 for H.sapiens, or taxon name, e.g. Homo)*

there MUST NOT be any sequence from the following organism/s: (taxonomic id from an organism, e.g. 9606 for H.sapiens, or taxon name, e.g. Homo)*
*if more than one, separate them by "+", e.g. 9606+Homo
.

SUBMIT

| What's this? | e.g. example 1, example 2

	CABRA	FastaHerder2	MAGA	ProteinPathTracker	polyQ context
	RACCOON	sQanner	Traitpedia	UEP	dAPE