Groups similar protein sequences of comparable lengths

Query: sp|Q09884|DCR1_SCHPO

Query:


>sp|Q09884|DCR1_SCHPOProtein Dicer OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dcr1 PE=1 SV=1
MDISSFLLPQLLRKYQQDVYNIASKQNTLLVMRTGAGKTLLAVKLIKQKLEEQILIQESNLEHKKISVFLVNKVPLVFQQAEYIRSQLPAKVGMFYGELS
IEMSEQLLTNIILKYNVIVITADLFYLFLARGFLSINDLNLIIFDECHHAIGNDAYARIMNDFYHRAKAVLSKKHFTLPRIFGMTASPFTGKKGNLYHRL
YQWEQLFDSKAHVVSENELADYFCLPEESYVMYSNKLVVPPSDSIIKKCEETLQGCKLISRAVKTALAETIDMGLWFGEQVWLYLVDFVETKRLKKKALG
KQLSDDEELAIDRLKIFVEDWKNNKYSDNGPRIPVFDSTDVTDKVFKLLELLKATYRKSDSVRTVIFVERKATAFTLSLFMKTLNLPNIRAHSFIGHGPS
DQGEFSMTFRRQKDTLHKFKTGKYNVLIATAVAEEGIDVPSCNLVIRFNICRTVTQYVQSRGRARAMASKFLIFLNTEELLIHERILHEEKNLKFALSEL
SNSNIFDSLVCEERERVTDDIVYEVGETGALLTGLYAVSLLYNFCNTLSRDVYTRYYPTFTAQPCLSGWYCFEVELPKACKVPAAQGSPAKSIRKAKQNA
AFIMCLDLIRMGLIDKHLKPLDFRRKIADLETLEEDELKDEGYIETYERYVPKSWMKVPEDITRCFVSLLYTDANEGDNHIFHPLVFVQAHSFPKIDSFI
LNSTVGPRVKIVLETIEDSFKIDSHLLELLKKSTRYLLQFGLSTSLEQQIPTPYWLAPLNLSCTDYRFLENLIDVDTIQNFFKLPEPVQNVTDLQSDTVL
LVNPQSIYEQYAFEGFVNSEFMIPAKKKDKAPSALCKKLPLRLNYSLWGNRAKSIPKSQQVRSFYINDLYILPVSRHLKNSALLIPSILYHIENLLVASS
FIEHFRLDCKIDTACQALTSAESQLNFDYDRLEFYGDCFLKLGASITVFLKFPDTQEYQLHFNRKKIISNCNLYKVAIDCELPKYALSTPLEIRHWCPYG
FQKSTSDKCRYAVLQKLSVKRIADMVEASIGACLLDSGLDSALKICKSLSVGLLDISNWDEWNNYFDLNTYADSLRNVQFPYSSYIEETIGYSFKNKKLL
HLAFIHPSMMSQQGIYENYQQLEFLGDAVLDYIIVQYLYKKYPNATSGELTDYKSFYVCNKSLSYIGFVLNLHKYIQHESAAMCDAIFEYQELIEAFRET
ASENPWFWFEIDSPKFISDTLEAMICAIFLDSGFSLQSLQFVLPLFLNSLGDATHTKAKGDIEHKVYQLLKDQGCEDFGTKCVIEEVKSSHKTLLNTELH
LTKYYGFSFFRHGNIVAYGKSRKVANAKYIMKQRLLKLLEDKSNLLLYSCNCKFSKKKPSDEQIKGDGKVKSLT

Download clusters:784155902060778.txt


Results hsp's heatmap

   1 --------------------------------------------------------------------------------------------------- 1374 sp|Q09884|DCR1_SCHPO   SwissProt cluster

   1 --------------------------------------------------------------------------------------------------- 1374 sp|Q09884|DCR1_SCHPOS.pombe (Fungi > Ascomycota)
 123  ------- -------- --  --- -  -----  -----------------         ---  ---- --  ---------- -          - 874  sp|Q7S8J7|DCL1_NEUCRN.crassa (Fungi > Ascomycota)
  33  ------ ------  - - - - --------- ----------                   -  -----  ---- ----------          - 667  sp|Q5N870|DCL3A_ORYSJO.sativa (Plantae > Angiosperms)
  25  ------ -------  - ---  ------------ -------                   - ------  ------------- -          - 637  sp|Q3EBC8|DCL2_ARATHA.thaliana (Plantae > Angiosperms)
 747                          -- ------ -  --------                 --------- --- -------------  ----  - 1215 tr|I1CQJ3|I1CQJ3_RHIO9R.delemar (Fungi > Rhizopus)
 344 ------- ------  -  ----- -- ----- --- ------                  ---------- ---- ------ - -          - 962  tr|D8S6V8|D8S6V8_SELMLS.moellendorffii (Plantae > Streptophyta)
  14  ------ ----- -  --   --- -  -------- --  ---                  -  -----  ------------  -          - 678  sp|P34529|DCR1_CAEELC.elegans (Metazoa > Nematoda)
  11  ------- ---- ---------- --   ------ ---- --                      ---    ------------- -          - 625  tr|A0A088ABX2|A0A088ABX2_APIMEA.mellifera (Metazoa > Arthropoda > Insecta)
  56  ------------ ---  - --- --  -----                                ----   -- ------ --  -          - 538  tr|B3RKG6|B3RKG6_TRIADT.adhaerens (Metazoa > Placozoa)
 322   ----------- - -  ----- -- ------                                                                - 829  tr|K1QJL0|K1QJL0_CRAGIC.gigas (Metazoa > Mollusca)
 403   ----- - - -   ------   -- ------                                                                - 912  tr|F1NDV4|F1NDV4_CHICKG.gallus (Metazoa > Chordata > Aves)
 238   ------  ----  ---  -  --- ----- -                                                               - 761  tr|F7E080|F7E080_XENTRX.tropicalis (Metazoa > Chordata > Amphibia)
1160  ------- ----                 ---- -- --                          -- - - - -  ------  --          - 1526 tr|E9G444|E9G444_DAPPUD.pulex (Metazoa > Arthropoda > Crustacea)
   3   ---  -- -  ----- - -   -- -----                                                                 - 491  tr|H2RSY8|H2RSY8_TAKRUT.rubripes (Metazoa > Chordata > Teleostei)
 445  ----- ------ -           -  -------- --- --   ------    - --  -- - --    ---------- ---          - 714  sp|Q6TUI4|DICER_BOVINB.taurus (Metazoa > Chordata > Mammalia)
1220  --- ---- - - ---- --- ----   ----                             -- -- -- --- ------------          - 1583 tr|K0SQP6|K0SQP6_THAOCT.oceanica (Stramenopiles)
 431  ------------ -           - ------ -- --- -- -   ----    - --  --------  ---  ------ ---          - 1082 sp|Q6TV19|DICER_DANRED.rerio (Metazoa > Chordata > Teleostei)
 546                                                                   ---------   ------ ----         - 898  tr|G4LVA9|G4LVA9_SCHMAS.mansoni (Metazoa > Platyhelminthes)
 445  ----- ------ -           -  ----- ------ --                      -----       ------ ---          - 715  sp|Q9UPY3|DICER_HUMANH.sapiens (Metazoa > Chordata > Mammalia)
 445  ----- ------ -           -  -------- --- --                      -----   ---------- ---          - 715  tr|H0ZQZ5|H0ZQZ5_TAEGUT.guttata (Metazoa > Chordata > Aves)
 445  ----- ------ -           -  ----- ------ --                      -----      ------- ---          - 715  tr|G1KND9|G1KND9_ANOCAA.carolinensis (Metazoa > Chordata > Iguania)
1487  ----- --- -- -          --- -- -                           -- -  -----  ---- -------- -          - 1746 tr|W4ZJ51|W4ZJ51_STRPUS.purpuratus (Metazoa > Echinodermata)
 400  ----- - ----     ----- - -   --- - ---- ---                                                      - 831  tr|Q3SE28|Q3SE28_PARTEP.tetraurelia (Alveolata > Ciliophora)
 537                                                                    ---------- ----------          - 800  tr|A7SU62|A7SU62_NEMVEN.vectensis (Metazoa > Cnidaria)
 285  -- ---------             - ----- ---                                                             - 449  tr|Q54H25|Q54H25_DICDID.discoideum (Amoebozoa)
 436  --- ----- --             -  ------ ----  --                      -----  -    ----------          - 704  tr|F6XSF3|F6XSF3_CIOINC.intestinalis (Metazoa > Chordata > Tunicata)
1983  ------ - ---                -----                                ---         -------- -          - 2161 tr|Q7QCW7|Q7QCW7_ANOGAA.gambiae (Metazoa > Arthropoda > Insecta)
 358                         ---- -----                                                                  520  tr|D8U6D5|D8U6D5_VOLCAV.carteri (Plantae > Chlorophyta)
 988  -----   --                  ----- -                                -         -------  -          - 1110 tr|A8ITW8|A8ITW8_CHLREC.reinhardtii (Plantae > Chlorophyta)
  24                                                                    ---- --    - --------          - 150  sp|P51833|RNC_BACSUB.subtilis (Bacteria > Gram +)
  14                                                                   ---- --- -- -----------         - 154  sp|P56118|RNC_HELPYH.pylori (Bacteria > Gram -)
   9                                                                   --------    -----------         - 138  sp|P0A7Y0|RNC_ECOLIE.coli (Bacteria > Gram -)
 328     -- - ----              -------                                                                - 449  tr|Q74MD5|Q74MD5_NANEQN.equitans (Archaea > Nanoarchaeota)
 541  ----- ------                ---- -                                                               - 644  sp|P40562|MPH1_YEASTS.cerevisiae (Fungi > Ascomycota)
  18                                                                    --- ----    ----- ---          - 127  sp|P74368|RNC1_SYNY3Synechocystis sp (Bacteria > Cyanobacteria)
 399                           -------                                                                   491  tr|O96264|O96264_PLAF7P.falciparum (Alveolata > Apicomplexa)
 211                                                                  ---- ----                        - 373  tr|X6N801|X6N801_RETFIR.filosa (Rhizaria)
 559                          --------                                                                   685  tr|K4DXM8|K4DXM8_TRYCRT.cruzi (Euglenozoa)
 433    --- ---                -------                                                                 - 569  tr|V6U2Z5|V6U2Z5_GIAING.lamblia (Diplomonadida)
 349                         ---- ----                                                                   471  tr|A9V2S5|A9V2S5_MONBEM.brevicollis (Choanoflagellida)
 347                           ------- --                                                                474  sp|Q8SQK9|DHH1_ENCCUE.cuniculi (Fungi > Microsporidia)
 265                           -------                                                                   378  tr|Q9HQA5|Q9HQA5_HALSAH.salinarum (Archaea > Euryarchaeota)



--------------  HelicaseATP-binding
--------------  HelicaseC-terminal
--------------  DicerdsRNA-bindingfold
--------------  RNaseIII1
--------------  RNaseIII2
--------------  PAZ


   **Click on the leader to display its annotations**

Leader: (1:)sp|Q09884|DCR1_SCHPO
Leader: (1:)sp|Q09884|DCR1_SCHPO
Leader: (1:)sp|Q7S8J7|DCL1_NEUCR
Leader: (1:)sp|Q5N870|DCL3A_ORYSJ
Leader: (1:)sp|Q3EBC8|DCL2_ARATH
Leader: (1:)tr|I1CQJ3|I1CQJ3_RHIO9
Leader: (1:)tr|D8S6V8|D8S6V8_SELML
Leader: (1:)sp|P34529|DCR1_CAEEL
Leader: (1:)tr|A0A088ABX2|A0A088ABX2_APIME
Leader: (1:)tr|B3RKG6|B3RKG6_TRIAD
Leader: (1:)tr|K1QJL0|K1QJL0_CRAGI
Leader: (1:)tr|F1NDV4|F1NDV4_CHICK
Leader: (1:)tr|F7E080|F7E080_XENTR
Leader: (1:)tr|E9G444|E9G444_DAPPU
Leader: (1:)tr|H2RSY8|H2RSY8_TAKRU
Leader: (1:)sp|Q6TUI4|DICER_BOVIN
Leader: (1:)tr|K0SQP6|K0SQP6_THAOC
Leader: (1:)sp|Q6TV19|DICER_DANRE
Leader: (1:)tr|G4LVA9|G4LVA9_SCHMA
Leader: (1:)sp|Q9UPY3|DICER_HUMAN
Leader: (1:)tr|H0ZQZ5|H0ZQZ5_TAEGU
Leader: (1:)tr|G1KND9|G1KND9_ANOCA
Leader: (1:)tr|W4ZJ51|W4ZJ51_STRPU
Leader: (1:)tr|Q3SE28|Q3SE28_PARTE
Leader: (1:)tr|A7SU62|A7SU62_NEMVE
Leader: (1:)tr|Q54H25|Q54H25_DICDI
Leader: (1:)tr|F6XSF3|F6XSF3_CIOIN
Leader: (1:)tr|Q7QCW7|Q7QCW7_ANOGA
Leader: (1:)tr|D8U6D5|D8U6D5_VOLCA
Leader: (1:)tr|A8ITW8|A8ITW8_CHLRE
Leader: (1:)sp|P51833|RNC_BACSU
Leader: (1:)sp|P56118|RNC_HELPY
Leader: (1:)sp|P0A7Y0|RNC_ECOLI
Leader: (1:)tr|Q74MD5|Q74MD5_NANEQ
Leader: (1:)sp|P40562|MPH1_YEAST
Leader: (1:)sp|P74368|RNC1_SYNY3
Leader: (1:)tr|O96264|O96264_PLAF7
Leader: (1:)tr|X6N801|X6N801_RETFI
Leader: (1:)tr|K4DXM8|K4DXM8_TRYCR
Leader: (1:)tr|V6U2Z5|V6U2Z5_GIAIN
Leader: (1:)tr|A9V2S5|A9V2S5_MONBE
Leader: (1:)sp|Q8SQK9|DHH1_ENCCU
Leader: (1:)tr|Q9HQA5|Q9HQA5_HALSA


Time elapsed: 32 seconds



ABOUT US| CONTACT| HELP!