Groups similar protein sequences of comparable lengths

Welcome to Fasta Herder, a web server to cull out redundant protein sequences from a set of sequences.
Fasta Herder works by finding and clustering together protein homologs in a fasta file that have similar lengths.
We are the Computational Biology and Data Mining Group, lead by Prof.Dr.Miguel Andrade, at IMB Mainz (Germany).

Fasta Herder was developed by Carol Perez-Iratxeta, at OHRI Ottawa (Canada), in 2014. It featured mode 1.
Fasta Herder 2 was developed by Pablo Mier, at IMB Mainz (Germany), in 2015. It features modes 1, 2, 3 and 4.

If you want to know more about us, visit our web page or contact us.